Compiling nwchem – nwchem

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On this page, a step-by-step description of the build process and necessary and optional environment variables is outlined. 200 usd to euro In addition, based on the experiences of developers and users how-to’s for various platforms have been created. Gbp stock price These how-to’s will be updated with additional platforms and better environment variables over time.


New in NWChem 6.6: If the location of the mpif90 command is part of your PATH env. Convert binary to hexadecimal variable, NWChem will figure out the values of LIBMPI, MPI_LIB and MPI_INCLUDE (if they are not set). Market futures cnn Therefore, we do NOT recommend to set LIBMPI, MPI_LIB and MPI_INCLUDE and add the location of mpif90 to the PATH variable, instead.

Note that additional environment variables need to be defined to specify the location of the Python libraries, when the python module is compiled. Funny jokes for adults clean See the optional environmental variables section for specifics.

Note: -DDFLT_TOT_MEM sets the default dynamic memory available for NWChem to run, where the units are in doubles. Euro stock exchange Instead of manually defining these one can optionally use the “getmem.nwchem” script in the $NWCHEM_TOP/contrib directory. Euro chart This script should be run after an initial build of the binary has been completed. Usd gbp The script will assess memory availability and make an educated guess, recompile the appropriate files and relink.

Python programs may be embedded into the NWChem input and used to control the execution of NWChem. Exchange rate euro dollar To build with Python, Python needs to be available on your machine. China stock market futures The software can be download from http://www.python.org . Commodity futures market price quotes Follow the Python instructions for installation and testing. Binary converter to text NWChem has been tested with Python versions 1.x and 2.x.

all the linking bits should be picked up, therefore you will not need to set any further env .variable other than PYTHONHOME and PYTHONVERSION (and safely ignore the rest of this paragraph)

USE_PYTHON64 is needed on platforms were the Python library is found under the /usr/lib64 tree instead of /usr/lib (e.g. Streaming forex rates 64-bit RHEL6: /usr/lib64/python2.6/config/libpython2.6.so).

PYTHONLIBTYPE=so needs to be set when static libraries are not present, and shared libraries needs to be used, instead (/usr/lib64/python2.6/config/libpython2.6.a vs /usr/lib64/python2.6/config/libpython2.6.so).

To run with Python, make sure that PYTHONHOME is set as mentioned above. Call option example You will also need to set PYTHONPATH to include any modules that you are using in your input. Baht to usd Examples of Python within NWChem are in the $NWCHEM_TOP/QA/tests/pyqa and $NWCHEM_TOP/contrib/python directories.

By default NWChem uses its own basic linear algebra subroutines (BLAS). Exchange rate aud usd To include faster BLAS routines, the environment variable BLASOPT needs to be set before building the code. Aed usd For example, with ATLAS

WARNING: In the case of 64-bit platforms, most vendors optimized BLAS libraries cannot be used. Usd to rmb This is due to the fact that while NWChem uses 64-bit integers (i.e. Fraction calculator that shows work integer*8) on 64-bit platforms, most of the vendors optimized BLAS libraries used 32-bit integers. Msn news breaking news The same holds for the ScaLAPACK libraries, which internally use 32-bit integers.

• GotoBLAS2 (or OpenBLAS) can be installed with 64bit integers. Usd rub bloomberg This is accomplished by compiling the GotoBLAS2 library after having by edited the GotoBLAS2 Makefile.rule file and un-commenting the line containing the INTERFACE64 definition. Eur usd exchange rate forecast In other words, the line

• ACML and MKL can support 64-bit integers if the appropriate library is chosen. Futures market hours For MKL, one can choose the ILP64 Version of Intel® MKL and the correct recipe can be extracted from the website https://software.intel.com/en-us/articles/intel-mkl-link-line-advisor. Rose quotes For ACML the int64 libraries should be chosen, e.g. Aud to usd conversion rate in the case of ACML 4.4.0 using a PGI compiler /opt/acml/4.4.0/pgi64_int64/lib/libacml.a

The 5.0 (obsolete) version of NBO provides a utility to generate source code that can be linked into computational chemistry packages such as NWChem. 300 us in canadian To utilize this functionality, follow the instructions in the NBO 5 package to generate an nwnbo.f file. Usd graph Linking NBO into NWChem can be done using the following procedure:

Note 1: If in a Linux environment, FC is set equal to anything other than the tested compilers, there is no guarantee of a successful installation, since the makefile structure has not been tested to process other settings. 10 in binary code In other words, please avoid make FC=”ifort -O3 -xhost” and stick to make FC=”ifort”, instead

Note 2: It’s better to avoid redefining CC, since a) NWChem does not have C source that is a computational bottleneck and b) we typically test just the default C compiler.

The reason is that the default values for FOPTIMIZE and COPTIMIZE have been tested by the NWChem developers (using the internal QA suites, among others), while any modification might produce incorrect results.

New in NWChem 6.6: If the location of the mpif90 command is part of your PATH env. Euro to pound sterling exchange rate variable, NWChem will figure out the values of LIBMPI, MPI_LIB and MPI_INCLUDE (if they are not set). Aud usd exchange rate Therefore, we recommend not to set LIBMPI, MPI_LIB and MPI_INCLUDE and add the location of mpif90 to the PATH variable, instead.

• Install gfortran (4.9) from http://hpc.sourceforge.net/ ( http://prdownloads.sourceforge.net/hpc/gcc-4.9-bin.tar.gz?download ) and make sure to add the location to your path

WARNING: Please do not use the Mac OS X default BLAS and LAPACK libraries available (or brew’s veclibfort), since they are causing NWChem to produce erroneous results

These are variables used for compilation on NERSC Edison, a Cray XC30, as of October 23rd 2015, when using Intel compilers (i.e. Dollar exchange rate today after issuing the commands module swap PrgEnv-gnu PrgEnv-intel). 1 usd in inr Very similar settings can be applied to other Cray XC30 computers, such as the UK ARCHER computer CRAY_CPU_TARGET=sandybridge

As of November 2016, the development version of NWChem contains threading support in the TCE coupled-cluster codes (primarily non-iterative triples in e.g. Dollar vs euro chart CCSD(T)), semi-direct CCSD(T), and plane-wave DFT (i.e. Current exchange rate usd to cad NWPW).

The latter two options are required to allocate temporaries in MCDRAM when running in flat mode. Usd today Please do not use cache mode for NWChem CCSD(T) codes. Ringgit usd exchange rate Note that using Fortran heap allocations means the memory statistics generated by MA are no longer accurate, but we doubt that anyone has been relying on these anyways.

Side note: With the exception of USE_FASTMEM, all of the options in the KNL section apply to Intel Xeon processors as well. Stock market meanings OpenMP is certainly useful on multicore processors as a way to reduce the communication overhead and memory footprint of NWChem.

Please consult the Intel or similar documentation regarding MPI+OpenMP affinity on your system. Kurs usd ke rupiah This is a complicated issue that depends on the software you use; it is impossible to document all the different combinations of MPI and OpenMP implementations that may be used with NWChem.

If you encounter segfaults not related to ARMCI, you may need to set the following or recompile with -heap-arrays. Exchange rate us to canadian dollar Please create thread in the Forum if you observe this.

NWChem 6.5 (and later versions) offers the possibility of using Intel Xeon Phi hardware to perform the most computationally intensive part of the CCSD(T) calculations (non-iterative triples corrections).

From our experience using the CCSD(T) TCE module, we have determined that the optimal configuration is to use a single Global Arrays ranks for offloading work to each Xeon Phi card.

Therefore, 2 out 6 GA ranks assigned to a particular compute node will offload to the coprocessors, while the remaining 6 cores while be used for traditional CPU processing duties. Samsung washing machine codes Since during offload the host core is idle, we can double the number of OpenMP threads for the host ( OMP_NUM_THREADS=4) in order to fill the idle core with work from another GA rank (4 process with 4 threads each will total 16 threads on each node).

NWChem itself automatically detects the available coprocessors in the system and properly partitions them for optimal use, therefore no action is required other than specifying the number of processes on each node (using the appropriate mpirun/mpiexec options) and setting the value of OMP_NUM_THREADS as in the example above.

Very important: when running on clusters equipped with Xeon Phi and Infiniband network hardware (requiring ARMCI_NETWORK=OPENIB), the following env. Convert indonesian rupiah to usd variable is required, even in the case when the Xeon Phi hardware is not utilized % setenv ARMCI_OPENIB_DEVICE mlx4_0

WARNING: This is just a baseline port that we have tested and validated against our QA suite. Binary tools There is large room for improvement both for serial performance (compiler options) and parallel performance (use of alternative ARMCI_NETWORKs other than MPI-TS)

Once Mpich is installed, you should copy the installation files to a different location to avoid the failure of the tools compilation. Futures market cnn You can use the following command

As an unsupported alternative, Cygwin might be used with make, perl, and gcc/gfortran version 4 installed (however several Cygwin versions are not a good match for NWChem installation, for example cygwin version 1.7.32 — current version as of September 2014 — fails to compile NWChem)

It used to be possible to build a version for native Windows using the Compaq Visual Fortran compiler. Msn news usa This has not been tested for the last couple of releases as the NWChem.

To start the compilation, start the Microsoft makefile utility from the top level source directory by typing “nmake”. Nzd usd live chart Reminder: For Compaq visual fortran don’t forget to execute the “dfvars” script.

The build procedures outlined above will allow use of NWChem within the NWChem directory structure. Dollar exchange rate in india The code will look for the basis set library file in a default place within that directory structure. Usatoday com news To install the code in a general, public place (e.g., /usr/local/NWChem) the following procedure can be applied:

• Each user will need a .nwchemrc file to point to these default data files. Trading places stock market scene A global one could be put in /usr/local/NWChem/data and a symbolic link made in each users $HOME directory is probably the best plan for new installs. Convert aud to usd Users would have to issue the following command prior to using NWChem: ln -s /usr/local/NWChem/data/default.nwchemrc $HOME/.nwchemrc

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